The emergence of multidrug-resistant bacterial strains in diverse settings has been reported globally. In the Philippine shrimp aquaculture industry, antibiotics are used for the treatment of bacterial diseases during the production cycle. We report the draft genome of Vibrio parahaemolyticus PH698, a multidrug-resistant strain isolated from a Philippine shrimp farm.
Draft Genome Sequence of Vibrio parahaemolyticus Strain PH1339, Which Causes Acute Hepatopancreatic Necrosis Disease in Shrimp in the Philippines
Acute hepatopancreatic necrosis disease (AHPND), which affects multiple shrimp species, including the economically important Penaeus monodon and Penaeus vannamei, is characterized by massive sloughing of the epithelial cells of the hepatopancreas to the point of atrophy (1).
Call for applications: 2019-2020 Bioinformatics Training and Internship Program (Batch 04: Jan-Feb)
Student applicants must be undergraduate or graduate students in good academic standing, enrolled in a science or engineering course at an accredited college or university in the Philippines. Young professional applicants must have a BS degree in a science or engineering field, and be a researcher and/or faculty member employed at a research or higher education institution in the Philippines.
Application Deadline for 2nd, 3rd and 4th Batch of the Bioinformatics Training and Internship Program 2019-2020
The program extends to four (4) batches which will be held throughout 2019-2020. The training of the first batch will run from June 17-July 26 , 2019.
PGC hosts One Health Bioinformatics and Grant Writing Workshop
This skill building workshop aims to freely integrate available molecular data from global repositories that are pertinent to locally circulating pathogens and apply it to research areas of interest for both the Biological Threat Reduction Program of the US government thru the Defense Threat Reduction Agency.
Cracking the genomes of marine & non-model organisms: novel approaches for correcting, assembling and scaffolding genomic data using de Bruijn graphs and Hi-C contact maps
For a very long time, most bioinformatic tools for handling genome data have been geared toward haploid (or diploid but nearly homozygous) organisms such as humans, bacteria and laboratory strains of model species. As a result, these tools often perform very badly on highly heterozygous diploid or polyploid organisms, which is the case of many non-model and/or marine species.
Genome Assembly, Annotation, and Variant Calling (March 2019)
March 5-8, 2019 See more about this workshop.
Bioinformatics Symposium: Building networks, creating a community
The Core Facility for Bioinformatics (CFB) will be hosting its first ever Bioinformatics symposium with the theme, “Building Networks, Creating a Community”. This will be held on March 20, 2019 at the PGC bldg. A. Ma. Regidor St. National Science Complex, UP Diliman, Quezon City, 1101.
UP inaugurates Genomics facility
The Shared Genomics Core Laboratory (SGCL) at the Philippine Genome Center (PGC), UP Diliman was inaugurated on February 20 and officially handed over by the Commission on Higher Education (CHED) to the University.
Genome Assembly, Annotation, and Variant Calling
The Core Facility for Bioinformatics (CFB) is conducting a workshop on “Genome Assembly, Annotation, and Variant Calling” on March 5 to 8, 2019 at the PGC bldg. A. Ma. Regidor St. National Science Complex, UP Diliman, Quezon City, 1101.