PGC SARS-CoV-2 Bulletin No.2: Three Possible Routes of SARS-CoV-2 infection in the Philippines

Majority of the Philippine submissions (18 of 23) were collected in the month of March, wherein except for one sample which clustered with isolates from Shanghai, China, all others were observed to group into clades linked to the outbreak in the cruise ship, M/V Diamond Princess, moored in Yokohama, Japan in early February 2020. Later that month, passengers and crew members of this cruise ship representing various nationalities including Filipinos, Indians, and Australians were repatriated to their home countries.

PGC SARS-CoV-2 Bulletin No.1: Philippine Genome Center Reports Detection of the D614G Variant of SARS-CoV-2 Virus in the Philippines

COVID-19 or the Coronavirus Disease 2019 is caused by SARS-CoV-2 virus, the genome of which is a single-stranded positive sense RNA that is about 30,000 bases long. It contains 11 genes and several regions have been known to be immunogenic, including different parts of the Spike (S) protein, the Nucleocapsid (N) protein, as well as the Membrane (M) and Envelope (E) proteins, which have therefore been targeted for vaccine development.

PGC Core Facility for Bioinformatics releases six (6) genome sequences of SARS-CoV-2 from Philippine samples between March 22-28, 2020

The Philippine Genome Center (PGC) thru its Core Facility for Bioinformatics (CFB) releases today to the global community through the GISAID database six (6) genomes of the SARS-CoV-2 sequences from Philippine samples taken in Metro Manila between 26 to 28 March 2020.

Overcoming Challenges and Building Opportunities with Bioinformatics

The 2020 Bioinformatics Conference aims to bring together researchers, students, and professionals from the field of genomics and bioinformatics. Themed “#BioInfoPH: Overcoming Challenges, Building Opportunities”—the conference intends to surface the complexities of conducting bioinformatics and genomics research in the Philippines and therein address these challenges through the conference forum.

Call for applications: 2019-2020 Bioinformatics Training and Internship Program (Batch 04: Jan-Feb)

Student applicants must be undergraduate or graduate students in good academic standing, enrolled in a science or engineering course at an accredited college or university in the Philippines. Young professional applicants must have a BS degree in a science or engineering field, and be a researcher and/or faculty member employed at a research or higher education institution in the Philippines.

Cracking the genomes of marine & non-model organisms: novel approaches for correcting, assembling and scaffolding genomic data using de Bruijn graphs and Hi-C contact maps

For a very long time, most bioinformatic tools for handling genome data have been geared toward haploid (or diploid but nearly homozygous) organisms such as humans, bacteria and laboratory strains of model species. As a result, these tools often perform very badly on highly heterozygous diploid or polyploid organisms, which is the case of many non-model and/or marine species.